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Day 1: Sunday, 30 March 2008
Day 2: Monday, 31 March 2008
Day 3: Tuesday, 1 April 2008
Day 4: Wednesday, 2 April 2008
Day 1: Sunday, 30 March 2008
Time |
Event/Paper |
| 08:00 |
09:00 |
Breakfast |
| 09:00 |
09:15 |
Welcome Address |
Limsoon Wong & Martin Vingron |
| 09:15 |
10:15 |
KeyNote 1 |
Temple F. Smith |
Ulam Lecture: Computational Biology: Its Challenges Past, Present and Future |
| 10:15 |
10:40 |
50 |
| Caroline C. Friedel, Jan Krumsiek and Ralf Zimmer |
|
| Bootstrapping the interactome: unsupervised identification of protein complexes in yeast |
|
| 10:40 |
11:10 |
|
| 11:10 |
11:35 |
89 |
| Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai and Jonathan Eisen |
|
| CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads |
|
| 11:35 |
12:00 |
59 |
Yu Zhang, Giltae Song, Tomas Vinar, Eric Green, Adam Siepel and Webb Miller |
Reconstructing the evolutionary history of complex human gene clusters |
| 12:00 |
12:25 |
213 |
| Paul Medvedev and Michael Brudno |
|
| Ab Initio Short Read Assembly With Mate Pair Data |
|
| 12:25 |
14:20 |
| Lunch Break And Poster Session |
|
| 14:20 |
15:20 |
KeyNote 2 |
|
| Orchestration of DNA Methylation |
|
| 15:20 |
15:45 |
111 |
| Tien-ho Lin, Pradipta Ray, Geir K. Sandve, Selen Uguroglu and Eric Xing |
|
| BayCis: a Bayesian hierarchical HMM for cis-regulatory module decoding in metazoan genomes |
|
| 15:45 |
16:15 |
Tea Break |
| 16:15 |
16:40 |
117 |
| Yanxin Shi, Itamar Simon, Tom Mitchell and Ziv Bar-Joseph |
|
| A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors |
|
| 16:40 |
17:05 |
182 |
| Raluca Gordan, Leelavati Narlikar and Alexander Hartemink. |
|
| A fast, alignment-free, conservation-based method for transcription factor binding site discovery |
|
| 17:05 |
17:30 |
215 |
| John Hawkins and Timothy Bailey. |
|
| The Statistical Power of Phylogenetic Motif Models |
|
| Bus Transfer |
| 18:30 |
21:30 |
Lilly Welcome Reception to RECOMB2008 |
Day 2: Monday, 31 March 2008
Time |
Event/Paper |
| 08:00 |
09:00 |
Breakfast |
| 09:00 |
10:00 |
KeyNote 3 |
Edison Liu |
Distinguished Technology Lecture: Transcriptional Regulation and Cancer Genomics |
| 10:00 |
10:25 |
148 |
Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart Kim and Eugene Myers. |
Automatic Recognition of Cells (ARC) for 3D Images of C. elegans |
| 10:25 |
10:55 |
Tea Break |
| 10:55 |
11:20 |
14 |
Ritendra Datta and Marshall Bern. |
Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing |
| 11:20 |
11:45 |
55 |
Yu Lin, Yaotao Qiao, Chungong Yu, Shiwei Sun and Dongbo Bu. |
A Fragmentation Event Model for Peptide Identification by Mass Spectrometry |
| 11:45 |
12:10 |
109 |
Yong Li, Randy Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng and Haixu Tang |
A Bayesian approach to protein inference problem in shotgun proteomics |
| 12:10 |
12:35 |
128 |
Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger Linington, Pieter Dorrestein and Pavel Pevzner |
| De Novo Sequencing of Nonribosomal Peptides |
|
| 12:35 |
14:00 |
Lunch Break |
| 14:00 |
15:00 |
KeyNote 4 |
Sang Yup Lee |
Systems Metabolic Engineering |
| 15:00 |
15:25 |
131 |
Mustafa Kirac and Gultekin Ozsoyoglu |
Protein Function Prediction based on Patterns in Biological Networks |
| 15:25 |
15:55 |
Tea Break |
| 15:55 |
16:20 |
31 |
Jason Flannick, Antal Novak, Chuong B. Do, Balaji S. Srinivasan and Serafim Batzoglou. |
Automatic Parameter Learning for Multiple Network Alignment |
| 16:20 |
16:45 |
168 |
Michael Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael Waterman and Jasmine Zhou. |
An Integrative Network Approach To Map the Transcriptome to the Phenome |
| 16:45 |
17:10 |
191 |
Maxim Kalaev, Vineet Bafna and Roded Sharan. |
Fast and Accurate Alignment of Multiple Protein Networks |
| 17:10 |
17:35 |
139 |
Michael Baym, Chris Bakal, Norbert Perrimon and Bonnie Berger |
High-Resolution Modeling of Cellular Signaling Networks |
| 17:35 |
18:00 |
Break |
| 18:00 |
19:00 |
RECOMB Business Meeting |
at the conference site, open for all, but usually attended by only ~50 persons |
| Bus Transfer To Hotel |
Day 3: Tuesday, 1 April 2008
Time |
Event/Paper |
| 08:00 |
09:00 |
Breakfast |
| 09:00 |
10:00 |
KeyNote 5 |
Andrei Lupas |
At the Origin of Life: How Did Folded Proteins Evolve? |
| 10:00 |
10:25 |
149 |
Gordon Burleigh, Oliver Eulenstein, Mukul Bansal and Andre Wehe. |
Locating Multiple Gene Duplications Through Reconciled Trees |
| 10:25 |
10:55 |
Tea Break |
| 10:55 |
11:20 |
15 |
Jing Zhang, Xin Gao, Jinbo Xu and Ming Li |
Rapid and Accurate Side China Prediction with Local Backbone Information |
| 11:20 |
11:45 |
77 |
Wei Zheng, Alan Friedman and Chris Bailey-Kellogg |
Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins |
| 11:45 |
12:10 |
63 |
Christophe Dessimoz, Daniel Margadant and Gaston Gonnet. |
Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework |
| 12:10 |
12:35 |
145 |
Sebastian Boecker, Katharina Jahn, Julia Mixtacki and Jens Stoye. |
Computation of Median Gene Clusters |
| 12:35 |
14:20 |
Lunch Break And Poster Session |
| 14:20 |
15:20 |
KeyNote 6 |
Suzanne Cory |
Distinguished Biology Lecture: BCL-2: From Translocation to Therapy |
| 15:20 |
15:45 |
53 |
Igor Ulitsky, Richard M. Karp and Ron Shamir. |
| Detecting disease-specific disregulated pathways via analysis of clinical expression profiles |
|
| 15:45 |
16:15 |
Tea Break |
| 16:15 |
16:40 |
194 |
Delbert Dueck, Brendan Frey, Nebojsa Jojic, Vladimir Jojic, Guri Giaever, Andrew Emili, Gabe Musso and Robert Hegele. |
Constructing Treatment Portfolios Using Affinity Propagation |
| 16:40 |
17:05 |
165 |
Michael Sammeth, Gabriel Valiente and Roderic Guigo. |
Bubbles, blobs and galls: Alternative Splicing Events of Dimension k in Splicing Graphs |
| 17:05 |
17:30 |
71 |
Bin Ma and Xiaoming Sun. |
More Efficient Algorithms for Closest String and Substring Problems |
| Bus Transfer |
| 19:00 |
22:00 |
Banquet |
Day 4: Wednesday, 2 April 2008
Time |
Event/Paper |
| 08:00 |
09:00 |
Breakfast |
| 09:00 |
10:00 |
KeyNote 7 |
Vivian G. Cheung |
Disruption of a Transcriptional Regulatory Pathway Contributes to Phenotypes in Carriers of Ataxia Telangiectasia |
| 10:00 |
10:25 |
57 |
Oliver Stegle, Anitha Kannan, Richard Durbin and John Winn |
Accounting for Non-Genetic Factors Improves the Power of eQTL Studies |
| 10:25 |
10:55 |
Tea Break |
| 10:55 |
11:20 |
41 |
Andreas Sundquist, Eugene Fratkin, Chuong B. Do and Serafim Batzoglou. |
Effect of Genetic Divergence in Identifying Ancestral Origin using HAPAA |
| 11:20 |
11:45 |
121 |
Sriram Sankararaman, Gad Kimmel, Eran Halperin and Michael I. Jordan. |
A Switching HMM for Inferring Ancestries in Admixed Populations |
| 11:45 |
12:10 |
129 |
Eleazar Eskin |
Increasing Power in Association Studies by using Linkage Disequilibrium Structure and Molecular Function as Prior Information |
| 12:10 |
13:30 |
Lunch Break |
| 13:30 |
13:55 |
142 |
Sivan Bercovici, Dan Geiger, Liran Shlush, Karl Skorecki and Alan Templeton. |
Panel Construction for Mapping in Admixed Populations via Expected Mutual Information |
| 13:55 |
14:20 |
46 |
Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, Ferry Hagen and Teun Boekhout. |
Constructing Level-2 Phylogenetic Networks from Triplets |
| 14:20 |
14:45 |
170 |
Rune Lyngsoe, Yun Song and jotun hein |
Accurate Computation of Likelihoods in the Coalescent with Recombination via Parsimony |
| 14:45 |
15:00 |
Award Ceremony |
| 15:00 |
15:30 |
Farewell Tea |
| Bus Transfer To Hotel |
Back to HOME
Last Modified on: 19 February 2008
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