| 1. | Kirubakaran Palani and Karthikeyan Muthusamy. "Molecular dynamics simulation of the interaction between TNKS1/TNKS2 and IWR1 inhibitor" |
| 2. | Trees-Juen Chuang, Feng-Chi Chen and Yen-Zho Chen. "DNA methylation is differentially correlated with exonic evolutionary rates in a position-dependent manner" |
| 3. | Jiangyu Li, Yiqing Mao, Xiaolei Wang, Yang Liu and Dongsheng Zhao. "A fast microorganism detection algorithm based on high-throughput sequencing data" |
| 4. | Hiroki Miyashita, Yoshio Kuroki and Norio Matsushima. "Novel leucine rich repeats" |
| 5. | Ryoichi Minai, Tsuyoshi Waku and Shoji Makino. "Gene network estimation by using information of transcription factor binding DNA sequence and microarray data from many samples" |
| 6. | Ai Muto, Katsuhisa Ozaki, Susumu Goto and Masaaki Kotera. "Development of lepidopteran insect ortholog database" |
| 7. | Kazuhiro Maeda and Hiroyuki Kurata. "Multiparameter sensitivity as a robustness measure for dynamic biochemical models" |
| 8. | Ben-Yang Liao and Meng-Pin Weng. "Genomic evidence for the importance of gene expression at transcription level in determining mammalian phenotypes" |
| 9. | Shuichi Yoshida, Sunao Kaneko and Takuhiro Nishio. "A computational approach for predicting SCN1A-related epilepsy phenotypes based on physico-chemical property changes" |
| 10. | Kazuhiro Takemotow and Kaori Kihara. "Association between modular organization of cancer signaling networks and patient survivability" |
| 11. | Ikuko Nishikawa, Tomoki Ishino, Yukako Tohsato, Shuichi Onami, Satoshi Fukuchi and Ken Nishikawa. "Predicting human protein phosphorylation sites in intrinsically disordered region by support vector machine" |
| 12. | Naoki Nariai, Osamu Hirose, Kaname Kojima, Kazuko Ueno and Masao Nagasaki. "Comparative assessment of computational methods for quantifying mammalian transcript isoforms from RNA-Seq data" |
| 13. | Kentaro Inoue, Hisaaki Shinohara and Mariko Okada-Hatakeyama. "Dynamic modeling of NF-kappaB signaling system in B cell" |
| 14. | Lina Ma, Ang Li, Dong Zou and Zhang Zhang. "Harnessing community intelligence in collaborative curation of human long non-coding RNAs" |
| 15. | Takuma Shirahase, Takayoshi Tomono, Hisao Kojima, Yukako Tohsato and Masahiro Ito. "Sequence analysis of intrinsically disordered region of nucleus related human O-GlcNAcylated protein" |
| 16. | Takayoshi Tomono, Hisao Kojima, Yukako Tohsato and Masahiro Ito. "A study of glycan evolution by comprehensive analysis of human glycosyltransferases using phylogenetic profiling" |
| 17. | Jiwoong Seok, Seongbeom Cho and Myungguen Chung. "Stand-alone LiveCD system for high-throughput gene expression regulation associate analysis" |
| 18. | Ipputa Tada, Seikoh Saitoh, Hiroaki Aoyama, Eisuke Kuraya, Shoya Arakawa, Hiroyuki Iha, Naoya Shinzato and Shinya Ikematsu. "Genomics of a lactic acid bacteria isolated from the Okinawan natural environment" |
| 19. | Aditya Kumar and Manju Bansal. "Role of DNA sequence dependent structural properties in gene expression" |
| 20. | Masao Nagasaki, Naoki Nariai, Kaname Kojima, Yumi Yamaguchi, Yukuto Sato, Riu Yamashita, Junya Yamagishi, Ikuko Motoike, Matsuyuki Shirota, Kengo Kinoshita, Jun Yasuda, Fukumi Katsuoka and Masayuki Yamamoto. "Thousands Japanese whole genome sequencing and bioinformatics at Tohoku Medical Megabank Organization" |
| 21. | Yushi Takahashi and Kiyoko F. Aoki-Kinoshita. "GlycomeAtlas: A visualization tool of glycan structure expression in human and mouse" |
| 22. | Koji Masuda, Claire Renard-Guillet, Takashi Sutani, Ryuichiro Nakato, Yuki Katou, Atsunori Yoshimura, Yutaka Kanoh, Hisao Masai and Katsuhiko Shirahige. "Replication initiation is associated to divergent promoter regions in Schizosaccharomyces pombe genome" |
| 23. | Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato and Masao Nagasaki. "Performance evaluation of variant calling methods with or without pedigree information" |
| 24. | Jiwoong Seok, Kijin Yu and Seongbeom Cho. "PAGED: Application for protein-protein-interaction analysis with gene expression data" |
| 25. | R. Rakshambikai, N. Srinivasan and Rupali A. Gadkari. "Analysis of extended kinome of zebrafish with immensely over represented PIM kinase subfamily" |
| 26. | Akitaka Shionoya, Kunihiko Ikuta, Shuichi Onami, Masahiro Ito and Yukako Tohsato. "Large-scale kinetic modeling for the central metabolism in Escherichia coli grown on glucose or glycerol" |
| 27. | B. Lakshmi, G. Archunan and N. Srinivasan. "Conservation of conformational changes upon ligand binding in homologous lipocalins" |
| 28. | Naruemon Pratanwanich and Pietro Lio'. "Bayesian matrix factorisation for learning latent pathway inter-dependencies and identifying responsive pathways" |
| 29. | Yuki Kato, Jakob Hull Havgaard and Jan Gorodkin. "Fast RNA structural comparison using coarse-grained base-pairing probabilities" |
| 30. | Zhang Zhang. "Community curation in the era of big data" |
| 31. | Akihiro Fujita and Kiyoko F. Aoki-Kinoshita. "Development of an algorithm to analyze atomic structures of glycan" |
| 32. | Yi-Hui Lin and Jiun-Ysn Huang. "Dysconnection of functional network in Schizophrenia: A ROI-based model approach" |
| 33. | Chandana Tennakoon, Jing-Quan Lim and Wing-Kin Sung. "Fast and accurate alignment with BatAlign" |
| 34. | Manabu Sugii, Adrien Faure and Hiroshi Matsuno. "A design method of artificial genetic circuits on effective search of these logical structures" |
| 35. | Rajesh Yella and Manju Bansal. "The relationship between transcription pre-initiation complexes and gene expression variability in S. cerevisiae" |
| 36. | Yukako Tohsato, Kenneth Ho, Koji Kyoda and Shuichi Onami. "SSBD: An integrated database for Systems Science of Biological Dynamics" |
| 37. | Naoaki Ono, Yuki Okuda, Masanori Arita, Daisaku Ohota, Tetsuo Sato, Tadao Sugiura, Md. Altaf-UI Amin and Shigehiko Kanaya. "Evaluation of transcriptome assembly platforms for RNA-seq method using non-model organisms" |
| 38. | Sophie Octavia, Qinning Wang, Sandeep Kaur, Vitali Sintchenko, Gwendolyn L Gilbert and Ruiting Lan. "Applicability of high-throughput genome sequencing to analyse a Salmonella enterica serovar Typhimurium DT170 outbreak" |
| 39. | Huy Hoang Do and Wing Kin Sung. "Small and fast data format for genomic numerical signals" |
| 40. | Mikhail Matz. "Gene Ontology analysis of continuous measures based on Mann-Whitney U test with adaptive clustering of GO categories" |
| 41. | Kazunori Waki and Hideo Matsuda. "Causal discovery from omics information using Bayesian network" |
| 42. | Nataly S. Safronova, Ekaterina V. Kulakova and Yuriy L. Orlov. "Applications of text complexity measures to genome sequences analysis" |
| 43. | Sriganesh Srihari, Chao Liu, Atefeh Taherian-Fard, Peter T. Simpson, Mark A. Ragan and Kum Kum Khanna. "Harnessing DNA damage repair pathways in breast cancer therapy: A synthetic lethality paradigm" |
| 44. | Saloni Agrawal, Asif Javed and Pauline C. Ng. "Combining phenotypic and genotypic data in implicating genes associated with rare disorders" |